Genes Expressed in Silk Glands of Bombyx mori Show Differential Association With Nuclear Matrix During 5^th Instar Development

Silk glands are highly regulated during 5^th instar larval development of Bombyx mori. Several genes show up and down regulation in silk glands during 5^th instar stage. Nuclear matrix tethers chromatin and marks them into active and inactive domains, thereby playing an important role in gene regulation. The association of differentially regulated genes of silk glands to nuclear matrix has not been studied earlier. The present study explored the association between binding of genes to nuclear matrix and their differential expression. The association to nuclear matrix of the selected genes was studied using in-silico methods. The MAR Finder analysis showed high MAR binding potential for all the genes selected. The number of MAR binding sites varied from day 1 to day 7. Differences were observed in MAR regions associated with the genes. Variation in number and MAR binding sites during development often coincided with differential expression of genes. This study gives a new perspective in the understanding of differential gene regulation in silk gland development.