1G.H. Patel Post Graduate Department of Computer Science and Technology, Sardar Patel University, Vallabh Vidyanagar, Gujarat-388120, India
2Gujarat Agricultural Biotechnology Institute, Navsari Agricultural University, Surat, Gujarat- 395007, India
*Corresponding author: sgr308@gmail.com
Online published on 6 August, 2015.
Arachis hypogaea L. (The peanut) is an important oilseed crop in tropical and subtropical regions of the world. This species belongs to the subfamily Fabaceae and family Leguminosae. Different parts of the plant such as leaves and seeds are used for many purposes in India. Next-generation sequencing technology (NGS) such as RNA-seq has provided a powerful approach for analyzing the Transcriptome accurately and cheaply. This study is focus on gene expression study of RNA-seq of Arachis hypogaea L. (The peanut); Three SRA files of BioProject ID 243319 downloaded from NCBI database and genome of Arabidopsis thaliana was considered as reference genome for gene expression study. Data analysis carried out with many Bioinformatics tools such as TopHat2, Cufflinks, Cuffmerge, Cuffcompare and Cuffdiff. CummeRbund tool was used to manage, visualize and integrate all of the data produced by a Cuffdiff tool for gene expression analysis. These data reported in the current study will serve as a valuable genetic resource of the Arachis hypogaea L.
Gene expression study of Arachis hypogaea L. (The peanut) analyzed with three SRA files of BioProject ID 243319.
Data analysis done with many Bioinformatics tools to get useful results.
Next-generation sequence data analysis of Arachis hypogaea L. (The peanut) based on Gene expression study will be very useful for further study or analysis purpose.
Transcriptome, gene expression, bioinformatics, Arachis hypogaea L
