ORYZA- An International Journal on Rice
  • Year: 2015
  • Volume: 52
  • Issue: 1

Expression analysis of Arabidopsis thaliana sos101 gene and its orthologues in three rice genotypes with differing salt tolerance

  • Author:
  • V Kumar1, MS Nimmy1, SK Lenka1,2, AK Singh3, KC Bansal1,4,
  • Total Page Count: 9
  • Page Number: 1 to 9

1National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi -110 012, India

2Current Address: Reliance Industries Limited, Reliance Technology Group, Reliance Corporate Park, Thane Belapur Road, Navi Mumbai-400701, India

3Indian Agricultural Research Institute, New Delhi -110 012, India

4National Bureau of Plant Genetic Resources, Pusa Campus, New Delhi- 110 012, India

*Email:kailashbansal@hotmail.com; kcbansal@nbpgr.ernet.in

Online published on 30 November, 2015.

Abstract

Salinity is one of the major abiotic stresses which adversely affect crop plants limiting growth and yield potential. In the present study, a salt induced sos101 gene from Arabidopsis thaliana (Atsos101) which encodes WD40 repeat containing protein has been identified. Furthermore, four candidate orthologues of Atsos101 gene in rice (Ossos101) have also been identified by database searching. Salt responsive temporal gene expression was analyzed by quantitative real-time RT-PCR for the candidate orthologues in three rice genotypes with differing salt tolerance at two different salt concentrations (50 mM and 100 mM NaCl). In order to understand the evolutionary relation between the Arabidopsis sos101 gene and its orthologues from rice and other crop plants a phylogenetic analysis was performed. Analysis of the amino acid sequence revealed highly conserved WD40 repeat domain in SOS101 protein and its orthologues in rice. This study revealed the salt inducible regulation of WD40 repeat proteins in both Arabidopsis and rice.

Keywords

Sos101, WD40 repeat protein, salt stress, arabidopsis, rice