Diversity of phytoplasmas infecting different crops and weeds in Tripuraregion of India

Phytoplasma suspected symptoms of little leaf, chlorosis, yellowing, phyllody, witches’ broom, flat stem, flower virescence and stunting were observed in sixteen plant species during surveys in fields, gardens, fruit orchards and nurseries of six districts of Tripura, India in 2017–2018. Out of 15 symptomatic plant samples belonging to different species, 12 were positive through nested PCR assays for phytoplasma presence. Pair wise sequence comparison, phylogeny and virtual RFLP analysis of phytoplasma partial 16S rDNA sequences of these 12 samples indicated the presence of different phytoplasma groups and subgroups (16SrI-B, 16SrII-D, 16SrVI-D, 16SrXIV-A 16SrI, 16SrIX and 16SrXI). ‘Candidatus Phytoplasma asteris’-related phytoplasmas (16SrI-B) were identified in sesame phyllody affected plants at South Tripura and in crape jasmine, Celosia argentea and Zinnia elegans from Unakoti, Dhalai, North Tripura and West Tripura district. In West Tripura ‘Ca. P. australasiae'related phytoplasmas (16SrII-D) were identified with Jatropha hastata and bitter gourd; ‘Ca. P. trifolii’-related phytoplasmas (16SrVI-D) were identified in chili and brinjal and ‘Ca. P. cynodontis’-related phytoplasmas (16SrXIV-A) were identified in palm grass samples from Sipahijala district. ‘Ca. P. phoenicium’-related phytoplasmas (16SrIX) were identified in cowpea; ‘Ca. P. oryzae’-related phytoplasmas were identified in arecanut from North Tripura and ‘Ca. P. asteris’-related phytoplasmas were detected in Toona ciliata from Jampui Hills. This study suggests the presence of a wide genetic diversity of phytoplasmas infecting different crops and weeds in the Tripura state of India.